Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors

QR Code

Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors

© 2015 Sperschneider, Williams, Hane, Singh and Taylor. The steadily increasing number of sequenced fungal and oomycete genomes has enabled detailed studies of how these eukaryotic microbes infect plants and cause devastating losses in food crops. During infection, fungal and oomycete pathogens secr...

Full description

Bibliographic Details
Main Authors:	Sperschneider, J., Williams, A., Hane, James, Singh, K., Taylor, J.
Format:	Journal Article
Published:	FRONTIERS MEDIA SA 2015
Online Access:	http://hdl.handle.net/20.500.11937/18969

Similar Items

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
by: Sperschneider, J., et al.
Published: (2018)

EffectorP: Predicting fungal effector proteins from secretomes using machine learning
by: Sperschneider, J., et al.
Published: (2016)

How many types of fungal & oomycete phytopathogens are there? Catastrophy for the bio/hemi/necrotroph divisions
by: Hane, J., et al.
Published: (2018)

ApoplastP: Prediction of effectors and plant proteins in the apoplast using machine learning
by: Sperschneider, J., et al.
Published: (2017)

Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi
by: Sperschneider, J., et al.
Published: (2015)

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors
by: Anderson, J., et al.
Published: (2017)

Effector gene prediction from fungal pathogen genome assemblies
by: Testa, Alison Clare
Published: (2016)

LOCALIZER: Subcellular localization prediction of both plant and effector proteins in the plant cell
by: Sperschneider, J., et al.
Published: (2017)

Application of proteomic methods in oomycete biology
by: Andronis, Christina, et al.
Published: (2024)

Fungal plant pathogenesis mediated by effectors
by: De Wit, P., et al.
Published: (2016)

Proteinaceous necrotrophic effectors in fungal virulence
by: Tan, Kar-Chun, et al.
Published: (2010)

Bioinformatic prediction of plant–pathogenicity effector proteins of fungi
by: Jones, Darcy, et al.
Published: (2018)

Prediction of New Fungal Pathogen Effector-like Proteins and Their Molecular Interactions with Their Host
by: Rozano, Lina
Published: (2022)

Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat
by: John, Evan, et al.
Published: (2022)

Getting the best from pot trials with soil-borne Oomycetes
by: Davison, Elaine, et al.
Published: (2022)

Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
by: Williams, A., et al.
Published: (2016)

Pan-parastagonospora comparative genome analysis-effector prediction and genome evolution
by: Syme, Robert, et al.
Published: (2018)

Sensitivity to three Parastagonospora nodorum necrotrophic effectors in current Australian wheat cultivars and the presence of further fungal effectors
by: Tan, Kar-Chun, et al.
Published: (2013)

Proteomic analysis revealed that the oomyceticide phosphite exhibits multi-modal action in an oomycete pathosystem
by: Andronis, Christina E., et al.
Published: (2024)

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors
by: Sperschneider, J., et al.
Published: (2014)

Calculating RIP mutation in fungal genomes using RIPCAL
by: Hane, James
Published: (2015)

Differential effector gene expression underpins epistasis in a plant fungal disease.
by: Phan, Huyen, et al.
Published: (2016)

Genomic analysis of the type VI secretion systems in Pseudomonas spp.: Novel clusters and putative effectors uncovered
by: Barret, M., et al.
Published: (2011)

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8
by: Hane, James, et al.
Published: (2014)

Resequencing and comparative genomics of stagonospora nodorum: Sectional gene absence and effector discovery
by: Syme, Robert, et al.
Published: (2013)

Fighting fungal pathogens with big data: new computational approaches for effector discovery and crop disease management
by: Jones, Darcy Adam Bain
Published: (2021)

Exploring the Zt3LysM effector in Zymoseptoria tritici, a fungal phytopathogen of wheat
by: Steel, Luca
Published: (2024)

A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat
by: Jones, Darcy, et al.
Published: (2019)

Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors
by: Thatcher, L., et al.
Published: (2016)

CodingQuarry: Highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts
by: Testa, Alison, et al.
Published: (2015)

Functional characterisation of type III secretion system effector protein, BIPC, in Burkholderia pseudomallei pathogenesis / Kang Wen Tyng
by: Kang , Wen Tyng
Published: (2017)

Regulatory insight for a Zn2Cys6 transcription factor controlling effector-mediated virulence in a fungal pathogen of wheat
by: John, Evan, et al.
Published: (2024)

Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici
by: McDonald, M., et al.
Published: (2016)

Repeat-Induced Point Mutation in Fungi: A Fungal-Specific Endogenous Mutagenesis Process
by: Hane, James, et al.
Published: (2015)

Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability
by: Ipcho, S., et al.
Published: (2011)

OcculterCut: A comprehensive survey of AT-rich regions in fungal genomes.
by: Renwick, Alison, et al.
Published: (2016)

Genetic analysis of wheat sensitivity to the ToxB fungal effector from Pyrenophora tritici-repentis, the causal agent of tan spot
by: Corsi, B., et al.
Published: (2020)

Highlights from ANTARES, and prospects for KM3NeT
by: James, Clancy
Published: (2015)

Benchmarking different deep regression models for predicting image rotation angle and robot’s end effector’s position
by: AlDahoul, Nouar, et al.
Published: (2019)

Genetic diversity and expression analyses of secreted in xylem effector genes of Fusarium oxysporum f. sp. cubense isolated from Peninsular Malaysia
by: Ahmad, Suhanna
Published: (2021)

Cannot write session to /tmp/vufind_sessions/sess_oo883kjl62iu9r78hqv6ddgtde