Towards semantic interoperability of protein data sources
Several approaches for data interoperation identified by Karp have been implemented for biological databases. We extend Karp's approach for interoperation not only to protein databases but also to knowledge bases and other information sources. This paper outlines algebra for protein data source...
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| Format: | Conference Paper |
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Springer-Verlag
2006
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| Online Access: | http://hdl.handle.net/20.500.11937/18930 |
| _version_ | 1848749888538411008 |
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| author | Sidhu, Amandeep Dillon, Tharam S. Chang, Elizabeth |
| author_facet | Sidhu, Amandeep Dillon, Tharam S. Chang, Elizabeth |
| author_sort | Sidhu, Amandeep |
| building | Curtin Institutional Repository |
| collection | Online Access |
| description | Several approaches for data interoperation identified by Karp have been implemented for biological databases. We extend Karp's approach for interoperation not only to protein databases but also to knowledge bases and other information sources. This paper outlines algebra for protein data source composition based on our existing work of Protein Ontology (PO). In this paper we consider the case of establishing correspondence between various protein data sources using semantic relationships over the conceptual framework of PO. Here we provide specific set of relationships over PO framework to cover data semantics for integrating data information from diverse protein data sources. These relationships help in defining semantic query algebra for PO to efficiently reason and query the instance store. |
| first_indexed | 2025-11-14T07:28:06Z |
| format | Conference Paper |
| id | curtin-20.500.11937-18930 |
| institution | Curtin University Malaysia |
| institution_category | Local University |
| last_indexed | 2025-11-14T07:28:06Z |
| publishDate | 2006 |
| publisher | Springer-Verlag |
| recordtype | eprints |
| repository_type | Digital Repository |
| spelling | curtin-20.500.11937-189302018-10-02T04:15:03Z Towards semantic interoperability of protein data sources Sidhu, Amandeep Dillon, Tharam S. Chang, Elizabeth biological databases protein ontology semantic semantic query algebra protein ontology framework interoperability relationships protein data source Several approaches for data interoperation identified by Karp have been implemented for biological databases. We extend Karp's approach for interoperation not only to protein databases but also to knowledge bases and other information sources. This paper outlines algebra for protein data source composition based on our existing work of Protein Ontology (PO). In this paper we consider the case of establishing correspondence between various protein data sources using semantic relationships over the conceptual framework of PO. Here we provide specific set of relationships over PO framework to cover data semantics for integrating data information from diverse protein data sources. These relationships help in defining semantic query algebra for PO to efficiently reason and query the instance store. 2006 Conference Paper http://hdl.handle.net/20.500.11937/18930 10.1007/11915072_90 Springer-Verlag restricted |
| spellingShingle | biological databases protein ontology semantic semantic query algebra protein ontology framework interoperability relationships protein data source Sidhu, Amandeep Dillon, Tharam S. Chang, Elizabeth Towards semantic interoperability of protein data sources |
| title | Towards semantic interoperability of protein data sources |
| title_full | Towards semantic interoperability of protein data sources |
| title_fullStr | Towards semantic interoperability of protein data sources |
| title_full_unstemmed | Towards semantic interoperability of protein data sources |
| title_short | Towards semantic interoperability of protein data sources |
| title_sort | towards semantic interoperability of protein data sources |
| topic | biological databases protein ontology semantic semantic query algebra protein ontology framework interoperability relationships protein data source |
| url | http://hdl.handle.net/20.500.11937/18930 |