Search Results - Birol, I.

RNA-Scoop: interactive visualization of transcripts in single-cell transcriptomes by Stephenson, M., Nip, K.M., Hafezqorani, S., Gagalova, Kristina, Yang, C., Warren, R.L., Birol, I.

Get full text

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2 by Nip, K.M., Hafezqorani, S., Gagalova, Kristina, Chiu, R., Yang, C., Warren, R.L., Birol, I.

Get full text

Leaf pigmentation in Cannabis sativa: Characterization of anthocyanin biosynthesis in colorful Cannabis varieties by Gagalova, Kristina K., Yan, Y., Wang, S., Matzat, T., Castellarin, S.D., Birol, I., Edwards, D., Schuetz, M.

Get full text

Profiling thyroid cancers on the molecular level by Kasaian, K., He, A., Thiessen, N., Mungall, K., Qian, J., Varhol, Richard, Zhao, Y., Birol, I., Moore, R., Mungall, A., Hirst, M., Marra, M., Walker, B., Wiseman, S., Jones, S.

Get full text

De novo transcriptome assembly with ABySS by Birol, I., Jackman, S., Nielsen, C., Qian, J., Varhol, Richard, Stazyk, G., Morin, R., Zhao, Y., Hirst, M., Schein, J., Horsman, D., Connors, J., Gascoyne, R., Marra, M., Jones, S.

Get full text

The genome of the forest insect pest Pissodes strobi reveals genome expansion and evidence of a Wolbachia endosymbiont by Gagalova, Kristina K., Whitehill, J.G.A., Culibrk, L., Lin, D., Levesque-Tremblay, V., Keeling, C.I., Coombe, L., Yuen, M.M.S., Birol, I., Bohlmann, J., Jones, S.J.M.

Get full text

The Lung Microbiome In COPD by Sze, M., Gosselink, J., McDonough, J., Elliott, M., Adam, S., Friedman, J., Zhao, Y., Varhol, Richard, Miller, D., He, A., Moore, R., Birol, I., Dimitriu, P., Mohn, W., Sin, D., Hayashi, S., Hogg, J.

Get full text

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak by Gardy, J., Johnston, J., Ho Sui, S., Cook, V., Shah, L., Brodkin, E., Rempel, S., Moore, R., Zhao, Y., Holt, R., Varhol, Richard, Birol, I., Lem, M., Sharma, M., Elwood, K., Jones, S., Brinkman, F., Brunham, R., Tang, P.

Get full text

Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response by Lo, T., Coombe, L., Gagalova, Kristina, Marr, A., Warren, R.L., Kirk, H., Pandoh, P., Zhao, Y., Moore, R.A., Mungall, A.J., Ritland, C., Pavy, N., Jones, S.J.M., Bohlmann, J., Bousquet, J., Birol, I., Thomson, A.

Get full text

Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada by Lin, D., Coombe, L., Jackman, S.D., Gagalova, Kristina, Warren, R.L., Austin Hammond, S., Pandoh, P., Zhao, Y., Moore, R.A., Mungall, A.J., Ritland, C., Jaquish, B., Isabel, N., Bousquet, J., Jones, S.J.M., Bohlmann, J., Birol, I.

Get full text

Complete chloroplast genome sequence of an engelmann spruce (Picea engelmannii, genotype Se404-851) from Western Canada by Lin, D., Coombe, L., Jackman, S.D., Gagalova, Kristina, Warren, R.L., Hammond, S.A., McDonald, H., Kirk, H., Pandoh, P., Zhao, Y., Moore, R.A., Mungall, A.J., Ritland, C., Doerksen, T., Jaquish, B., Bousquet, J., Jones, S.J.M., Bohlmann, J., Birol, I.

Get full text

Barnacle: Detecting and characterizing tandem duplications and fusions in transcriptome assemblies by Swanson, L., Robertson, G., Mungall, K., Butterfield, Y., Chiu, R., Corbett, R., Docking, T., Hogge, D., Jackman, S., Moore, R., Mungall, A., Nip, K., Parker, J., Qian, J., Raymond, A., Sung, S., Tam, A., Thiessen, N., Varhol, Richard, Wang, S., Yorukoglu, D., Zhao, Y., Hoodless, P., Sahinalp, S., Karsan, A., Birol, I.

Get full text

Complete genomic landscape of a recurring sporadic parathyroid carcinoma by Kasaian, K., Wiseman, S., Thiessen, N., Mungall, K., Corbett, R., Qian, J., Nip, K., He, A., Tse, K., Chuah, E., Varhol, Richard, Pandoh, P., McDonald, H., Zeng, T., Tam, A., Schein, J., Birol, I., Mungall, A., Moore, R., Zhao, Y., Hirst, M., Marra, M., Walker, B., Jones, S.

Get full text

De novo assembly and analysis of RNA-seq data by Robertson, G., Schein, J., Chiu, R., Corbett, R., Field, M., Jackman, S., Mungall, K., Lee, S., Okada, H., Qian, J., Griffith, M., Raymond, A., Thiessen, N., Cezard, T., Butterfield, Y., Newsome, R., Chan, S., She, R., Varhol, Richard, Kamoh, B., Prabhu, A., Tam, A., Zhao, Y., Moore, R., Hirst, M., Marra, M., Jones, S., Hoodless, P., Birol, I.

Get full text

Spruce giga-genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes by Gagalova, Kristina K., Warren, R.L., Coombe, L., Wong, J., Nip, K.M., Yuen, M.M.S., Whitehill, J.G.A., Celedon, J.M., Ritland, C., Taylor, G.A., Cheng, D., Plettner, P., Hammond, S.A., Mohamadi, H., Zhao, Y., Moore, R.A., Mungall, A.J., Boyle, B., Laroche, J., Cottrell, J., Mackay, J.J., Lamothe, M., Gérardi, S., Isabel, N., Pavy, N., Jones, S.J.M., Bohlmann, J., Bousquet, J., Birol, I.

Get full text

Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin by Morin, R., Johnson, N., Severson, T., Mungall, A., An, J., Goya, R., Paul, J., Boyle, M., Woolcock, B., Kuchenbauer, F., Yap, D., Humphries, R., Griffith, O., Shah, S., Zhu, H., Kimbara, M., Shashkin, P., Charlot, J., Tcherpakov, M., Corbett, R., Tam, A., Varhol, Richard, Smailus, D., Moksa, M., Zhao, Y., Delaney, A., Qian, H., Birol, I., Schein, J., Moore, R., Holt, R., Horsman, D., Connors, J., Jones, S., Aparicio, S., Hirst, M., Gascoyne, R., Marra, M.

Get full text

Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers by Yip, S., Butterfield, Y., Morozova, O., Chittaranjan, S., Blough, M., An, J., Birol, I., Chesnelong, C., Chiu, R., Chuah, E., Corbett, R., Docking, R., Firme, M., Hirst, M., Jackman, S., Karsan, A., Li, H., Louis, D., Maslova, A., Moore, R., Moradian, A., Mungall, K., Perizzolo, M., Qian, J., Roldan, G., Smith, E., Tamura-Wells, J., Thiessen, N., Varhol, Richard, Weiss, S., Wu, W., Young, S., Zhao, Y., Mungall, A., Jones, S., Morin, G., Chan, J., Cairncross, J., Marra, M.

Get full text

The clonal and mutational evolution spectrum of primary triple-negative breast cancers by Shah, S., Roth, A., Goya, R., Oloumi, A., Ha, G., Zhao, Y., Turashvili, G., Ding, J., Tse, K., Haffari, G., Bashashati, A., Prentice, L., Khattra, J., Burleigh, A., Yap, D., Bernard, V., McPherson, A., Shumansky, K., Crisan, A., Giuliany, R., Heravi-Moussavi, A., Rosner, J., Lai, D., Birol, I., Varhol, Richard, Tam, A., Dhalla, N., Zeng, T., Ma, K., Chan, S., Griffith, M., Moradian, A., Cheng, S., Morin, G., Watson, P., Gelmon, K., Chia, S., Chin, S., Curtis, C., Rueda, O., Pharoah, P., Damaraju, S., MacKey, J., Hoon, K., Harkins, T., Tadigotla, V., Sigaroudinia, M., Gascard, P., Tlsty, T., Costello, J., Meyer, I., Eaves, C., Wasserman, W., Jones, S., Huntsman, D., Hirst, M., Caldas, C., Marra, M., Aparicio, S.

Get full text

Comprehensive genomic characterization of squamous cell lung cancers by Hammerman, P., Voet, D., Lawrence, M., Voet, D., Jing, R., Cibulskis, K., Sivachenko, A., Stojanov, P., McKenna, A., Lander, E., Gabriel, S., Getz, G., Imielinski, M., Helman, E., Hernandez, B., Pho, N., Meyerson, M., Chu, A., Hye-Chun, J., Mungall, A., Pleasance, E., Robertson, A., Sipahimalani, P., Stoll, D., Balasundaram, M., Birol, I., Butterfield, Y., Chuah, E., Coope, R., Corbett, R., Dhalla, N., Guin, R., He, A., Hirst, C., Hirst, M., Holt, R., Lee, D., Li, H., Mayo, M., Moore, R., Mungall, K., Nip, K., Olshen, A., Schein, J., Slobodan, J., Tam, A., Thiessen, N., Varhol, Richard, Zeng, T., Zhao, Y., Jones, S., Marra, M., Saksena, G., Cherniack, A., Schumacher, S., Tabak, B., Carter, S., Nguyen, H., Onofrio, R., Crenshaw, A., Ardlie, K., Beroukhim, R., Winckler, W., Protopopov, A., Zhang, J., Hadjipanayis, A., Lee, S., Xi, R., Yang, L., Ren, X., Zhang, H., Shukla, S., Chen, P., Haseley, P., Lee, E., Chin, L.

Get full text

Comprehensive molecular characterization of human colon and rectal cancer by Muzny, D., Bainbridge, M., Chang, K., Dinh, H., Drummond, J., Fowler, G., Kovar, C., Lewis, L., Morgan, M., Newsham, I., Reid, J., Santibanez, J., Shinbrot, E., Trevino, L., Wu, Y., Wang, M., Gunaratne, P., Donehower, L., Creighton, C., Wheeler, D., Gibbs, R., Lawrence, M., Voet, D., Jing, R., Cibulskis, K., Sivachenko, A., Stojanov, P., McKenna, A., Lander, E., Gabriel, S., Ding, L., Fulton, R., Koboldt, D., Wylie, T., Walker, J., Dooling, D., Fulton, L., Delehaunty, K., Fronick, C., Demeter, R., Mardis, E., Wilson, R., Chu, A., Chun, H., Mungall, A., Pleasance, E., Gordon Robertson, A., Stoll, D., Balasundaram, M., Birol, I., Butterfield, Y., Chuah, E., Coope, R., Dhalla, N., Guin, R., Hirst, C., Hirst, M., Holt, R., Lee, D., Li, H., Mayo, M., Moore, R., Schein, J., Slobodan, J., Tam, A., Thiessen, N., Varhol, Richard, Zeng, T., Zhao, Y., Jones, S., Marra, M., Bass, A., Ramos, A., Saksena, G., Cherniack, A., Schumacher, S., Tabak, B., Carter, S., Pho, N., Nguyen, H., Onofrio, R., Crenshaw, A., Ardlie, K.

Get full text