Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data

by Yasunobu Okamura, Kengo Kinoshita
Published 2018-07-01

The predictive nature of transcript expression levels on protein expression in adult human brain

by Amy L. Bauernfeind, Courtney C. Babbitt
Published 2017-04-01

Estimating the frequency of multiplets in single-cell RNA sequencing from cell-mixing experiments

by Jesse D. Bloom
Published 2018-09-01

Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers

by Yu Fu, Pei-Hsuan Wu, Timothy Beane, Phillip D. Zamore, Zhiping Weng
Published 2018-07-01

Identification of an eight-gene prognostic signature for lung adenocarcinoma

by Li S, Xuan Y, Gao B, Sun X, Miao S, Lu T, Wang Y, Jiao W
Published 2018-09-01

Comparative RNA-Seq analysis on the regulation of cucumber sex differentiation under different ratios of blue and red light

by Jiali Song, Yiting Zhang, Shiwei Song, Wei Su, Riyuan Chen, Guangwen Sun, Yanwei Hao, Houcheng Liu
Published 2018-09-01

A hypothesis-driven approach to assessing significance of differences in RNA expression levels among specific groups of genes

by Mingze He, Peng Liu, Carolyn J. Lawrence-Dill
Published 2017-09-01

Differentiated transcriptional signatures in the maize landraces of Chiapas, Mexico

by Matthew A. Kost, Hugo R. Perales, Saranga Wijeratne, Asela J. Wijeratne, Eric Stockinger, Kristin L. Mercer
Published 2017-09-01

SQUID: transcriptomic structural variation detection from RNA-seq

by Cong Ma, Mingfu Shao, Carl Kingsford
Published 2018-04-01

RnaSeqSampleSize: real data based sample size estimation for RNA sequencing

by Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr
Published 2018-05-01

Novel roles for scleraxis in regulating adult tenocyte function

by Anne E. C. Nichols, Robert E. Settlage, Stephen R. Werre, Linda A. Dahlgren
Published 2018-08-01

Gene expression profile of human lung in a relatively early stage of COPD with emphysema

by Jeong I, Lim JH, Oh DK, Kim WJ, Oh YM
Published 2018-08-01

Single cell RNA-seq data clustering using TF-IDF based methods

by Marmar Moussa, Ion I. Măndoiu
Published 2018-08-01

The purplish bifurcate mussel Mytilisepta virgata gene expression atlas reveals a remarkable tissue functional specialization

by Marco Gerdol, Yuki Fujii, Imtiaj Hasan, Toru Koike, Shunsuke Shimojo, Francesca Spazzali, Kaname Yamamoto, Yasuhiro Ozeki, Alberto Pallavicini, Hideaki Fujita
Published 2017-08-01

Limitations of alignment-free tools in total RNA-seq quantification

by Douglas C. Wu, Jun Yao, Kevin S. Ho, Alan M. Lambowitz, Claus O. Wilke
Published 2018-07-01

Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis

by Wenjing Tao, Jinlin Chen, Dejie Tan, Jing Yang, Lina Sun, Jing Wei, Matthew A. Conte, Thomas D. Kocher, Deshou Wang
Published 2018-05-01

Genome-wide identification of lncRNAs associated with chlorantraniliprole resistance in diamondback moth Plutella xylostella (L.)

by Bin Zhu, Manyu Xu, Haiyan Shi, Xiwu Gao, Pei Liang
Published 2017-05-01

Whole-transcriptome analysis delineates the human placenta gene network and its associations with fetal growth

by Maya A. Deyssenroth, Shouneng Peng, Ke Hao, Luca Lambertini, Carmen J. Marsit, Jia Chen
Published 2017-07-01

Revelation of mRNAs and proteins in porcine milk exosomes by transcriptomic and proteomic analysis

by Ting Chen, Qian-Yun Xi, Jia-Jie Sun, Rui-Song Ye, Xiao Cheng, Rui-Ping Sun, Song-Bo Wang, Gang Shu, Li-Na Wang, Xiao-Tong Zhu, Qing-Yan Jiang, Yong-Liang Zhang
Published 2017-04-01

Quantitative analysis of cryptic splicing associated with TDP-43 depletion

by Jack Humphrey, Warren Emmett, Pietro Fratta, Adrian M. Isaacs, Vincent Plagnol
Published 2017-05-01