WebFR3D—a server for finding, aligning and analyzing recurrent RNA 3D motifs

by Petrov, Anton I., Zirbel, Craig L., Leontis, Neocles B.
Published 2011

Comprehensive survey and geometric classification of base triples in RNA structures

by Abu Almakarem, Amal S., Petrov, Anton I., Stombaugh, Jesse, Zirbel, Craig L., Leontis, Neocles B.
Published 2012

Classification and energetics of the base-phosphate interactions in RNA

by Zirbel, Craig L., Šponer, Judit E., Šponer, Jiri, Stombaugh, Jesse, Leontis, Neocles B.
Published 2009

R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures

by Rahrig, Ryan R., Petrov, Anton I., Leontis, Neocles B., Zirbel, Craig L.
Published 2013

JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs

by Roll, James, Zirbel, Craig L., Sweeney, Blake, Petrov, Anton I., Leontis, Neocles
Published 2016

Identifying novel sequence variants of RNA 3D motifs

by Zirbel, Craig L., Roll, James, Sweeney, Blake A., Petrov, Anton I., Pirrung, Meg, Leontis, Neocles B.
Published 2015

R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server

by Cannone, Jamie J., Sweeney, Blake A., Petrov, Anton I., Gutell, Robin R., Zirbel, Craig L., Leontis, Neocles
Published 2015

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

by Theis, Corinna, Zirbel, Craig L., zu Siederdissen, Christian Höner, Anthon, Christian, Hofacker, Ivo L., Nielsen, Henrik, Gorodkin, Jan
Published 2015

The Nucleic Acid Database: new features and capabilities

by Coimbatore Narayanan, Buvaneswari, Westbrook, John, Ghosh, Saheli, Petrov, Anton I., Sweeney, Blake, Zirbel, Craig L., Leontis, Neocles B., Berman, Helen M.
Published 2014