Identification of functional modules using network topology and high-throughput data

by Ulitsky, Igor, Shamir, Ron
Published 2007

Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks

by Ulitsky, Igor, Shamir, Ron
Published 2007

Constructing module maps for integrated analysis of heterogeneous biological networks

by Amar, David, Shamir, Ron
Published 2014

A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data

by Orenstein, Yaron, Shamir, Ron
Published 2014

Design of shortest double-stranded DNA sequences covering all k-mers with applications to protein-binding microarrays and synthetic enhancers

by Orenstein, Yaron, Shamir, Ron
Published 2013

Design of shortest double-stranded DNA sequences covering all k-mers with applications to protein-binding microarrays and synthetic enhancers

by Orenstein, Yaron, Shamir, Ron
Published 2015

Examination of exhaustive cloning attempts reveals that C. elegans piRNAs, transposons, and repeat sequences are efficiently cloned in yeast, but not in bacteria

by Sagy, Or, Shamir, Ron, Rechavi, Oded
Published 2014

GEVALT: An integrated software tool for genotype analysis

by Davidovich, Ofir, Kimmel, Gad, Shamir, Ron
Published 2007

Network-based prediction of protein function

by Sharan, Roded, Ulitsky, Igor, Shamir, Ron
Published 2007

Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites

by Raijman, Daniela, Shamir, Ron, Tanay, Amos
Published 2008

MGMR: leveraging RNA-Seq population data to optimize expression estimation

by Rozov, Roye, Halperin, Eran, Shamir, Ron
Published 2012

Assessing the number of ancestral alternatively spliced exons in the human genome

by Sorek, Rotem, Dror, Gideon, Shamir, Ron
Published 2006

Dissection of Regulatory Networks that Are Altered in Disease via Differential Co-expression

by Amar, David, Safer, Hershel, Shamir, Ron
Published 2013

Assessment of Algorithms for Inferring Positional Weight Matrix Motifs of Transcription Factor Binding Sites Using Protein Binding Microarray Data

by Orenstein, Yaron, Linhart, Chaim, Shamir, Ron
Published 2012

Fast lossless compression via cascading Bloom filters

by Rozov, Roye, Shamir, Ron, Halperin, Eran
Published 2014

A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs

by Shalgi, Reut, Lapidot, Michal, Shamir, Ron, Pilpel, Yitzhak
Published 2005

Functional genomic delineation of TLR-induced transcriptional networks

by Elkon, Ran, Linhart, Chaim, Halperin, Yonit, Shiloh, Yosef, Shamir, Ron
Published 2007

Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium

by Tanay, Amos, Steinfeld, Israel, Kupiec, Martin, Shamir, Ron
Published 2005

Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets

by Amar, David, Hait, Tom, Izraeli, Shai, Shamir, Ron
Published 2015

Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome

by Thévenin, Annelyse, Ein-Dor, Liat, Ozery-Flato, Michal, Shamir, Ron
Published 2014