PHOG: a database of supergenomes built from proteome complements

by Merkeev, Igor V, Novichkov, Pavel S, Mironov, Andrey A
Published 2006

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

by Makarova, Kira S, Sorokin, Alexander V, Novichkov, Pavel S, Wolf, Yuri I, Koonin, Eugene V
Published 2007

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics

by Novichkov, Pavel S., Brettin, Thomas S., Novichkova, Elena S., Dehal, Paramvir S., Arkin, Adam P., Dubchak, Inna, Rodionov, Dmitry A.
Published 2012

σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough

by Kazakov, Alexey E., Rajeev, Lara, Chen, Amy, Luning, Eric G., Dubchak, Inna, Mukhopadhyay, Aindrila, Novichkov, Pavel S.
Published 2015

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

by Ravcheev, Dmitry A, Best, Aaron A, Sernova, Natalia V, Kazanov, Marat D, Novichkov, Pavel S, Rodionov, Dmitry A
Published 2013

RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

by Cipriano, Michael J, Novichkov, Pavel N, Kazakov, Alexey E, Rodionov, Dmitry A, Arkin, Adam P, Gelfand, Mikhail S, Dubchak, Inna
Published 2013

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria

by Sun, Eric I, Leyn, Semen A, Kazanov, Marat D, Saier, Milton H, Novichkov, Pavel S, Rodionov, Dmitry A
Published 2013

Comparative Genomics of Transcriptional Regulation of Methionine Metabolism in Proteobacteria

by Leyn, Semen A., Suvorova, Inna A., Kholina, Tatiana D., Sherstneva, Sofia S., Novichkov, Pavel S., Gelfand, Mikhail S., Rodionov, Dmitry A.
Published 2014

RegTransBase—a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

by Kazakov, Alexei E., Cipriano, Michael J., Novichkov, Pavel S., Minovitsky, Simon, Vinogradov, Dmitry V., Arkin, Adam, Mironov, Andrey A., Gelfand, Mikhail S., Dubchak, Inna
Published 2007

Comparative genomics and evolution of regulons of the LacI-family transcription factors

by Ravcheev, Dmitry A., Khoroshkin, Matvei S., Laikova, Olga N., Tsoy, Olga V., Sernova, Natalia V., Petrova, Svetlana A., Rakhmaninova, Aleksandra B., Novichkov, Pavel S., Gelfand, Mikhail S., Rodionov, Dmitry A.
Published 2014

Network portal: a database for storage, analysis and visualization of biological networks

by Turkarslan, Serdar, Wurtmann, Elisabeth J., Wu, Wei-Ju, Jiang, Ning, Bare, J. Christopher, Foley, Karen, Reiss, David J., Novichkov, Pavel, Baliga, Nitin S.
Published 2014

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

by Novichkov, Pavel S, Kazakov, Alexey E, Ravcheev, Dmitry A, Leyn, Semen A, Kovaleva, Galina Y, Sutormin, Roman A, Kazanov, Marat D, Riehl, William, Arkin, Adam P, Dubchak, Inna, Rodionov, Dmitry A
Published 2013

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

by Rodionov, Dmitry A, Novichkov, Pavel S, Stavrovskaya, Elena D, Rodionova, Irina A, Li, Xiaoqing, Kazanov, Marat D, Ravcheev, Dmitry A, Gerasimova, Anna V, Kazakov, Alexey E, Kovaleva, Galina Yu, Permina, Elizabeth A, Laikova, Olga N, Overbeek, Ross, Romine, Margaret F, Fredrickson, James K, Arkin, Adam P, Dubchak, Inna, Osterman, Andrei L, Gelfand, Mikhail S
Published 2011