Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors

by Kepler, Thomas B
Published 2013

Amino acid biophysical properties in the statistical prediction of peptide-MHC class I binding

by Ray, Surajit, Kepler, Thomas B
Published 2007

Bayesian Estimation of the Active Concentration and Affinity Constants Using Surface Plasmon Resonance Technology

by Feng, Feng, Kepler, Thomas B.
Published 2015

Pathway level analysis of gene expression using singular value decomposition

by Tomfohr, John, Lu, Jun, Kepler, Thomas B
Published 2005

Normalization and analysis of DNA microarray data by self-consistency and local regression

by Kepler, Thomas B, Crosby, Lynn, Morgan, Kevin T
Published 2002

Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach

by Lu, Jun, Tomfohr, John K, Kepler, Thomas B
Published 2005

Identification and utilization of arbitrary correlations in models of recombination signal sequences

by Cowell, Lindsay G, Davila, Marco, Kepler, Thomas B, Kelsoe, Garnett
Published 2002

Prospective Estimation of Recombination Signal Efficiency and Identification of Functional Cryptic Signals in the Genome by Statistical Modeling

by Cowell, Lindsay G., Davila, Marco, Yang, Kaiyong, Kepler, Thomas B., Kelsoe, Garnett
Published 2003

Chiropteran types I and II interferon genes inferred from genome sequencing traces by a statistical gene-family assembler

by Kepler, Thomas B, Sample, Christopher, Hudak, Kathryn, Roach, Jeffrey, Haines, Albert, Walsh, Allyson, Ramsburg, Elizabeth A
Published 2010

A Model for Migratory B Cell Oscillations from Receptor Down-Regulation Induced by External Chemokine Fields

by Chan, Cliburn, Billard, Matthew, Ramirez, Samuel A., Schmidl, Harald, Monson, Eric, Kepler, Thomas B.
Published 2013

Quantification of total T-cell receptor diversity by flow cytometry and spectratyping

by Ciupe, Stanca M, Devlin, Blythe H, Markert, Mary Louise, Kepler, Thomas B
Published 2013

High-throughput identification and dendritic cell-based functional validation of MHC class I-restricted Mycobacterium tuberculosis epitopes

by Nair, Smita K., Tomaras, Georgia D., Sales, Ana Paula, Boczkowski, David, Chan, Cliburn, Plonk, Kelly, Cai, Yongting, Dannull, Jens, Kepler, Thomas B., Pruitt, Scott K., Weinhold, Kent J.
Published 2014

Envelope Deglycosylation Enhances Antigenicity of HIV-1 gp41 Epitopes for Both Broad Neutralizing Antibodies and Their Unmutated Ancestor Antibodies

by Ma, Ben-Jiang, Alam, S. Munir, Go, Eden P., Lu, Xiaozhi, Desaire, Heather, Tomaras, Georgia D., Bowman, Cindy, Sutherland, Laura L., Scearce, Richard M., Santra, Sampa, Letvin, Norman L., Kepler, Thomas B., Liao, Hua-Xin, Haynes, Barton F.
Published 2011

Identification of autoantigens recognized by the 2F5 and 4E10 broadly neutralizing HIV-1 antibodies

by Yang, Guang, Holl, T. Matt, Liu, Yang, Li, Yi, Lu, Xiaozhi, Nicely, Nathan I., Kepler, Thomas B., Alam, S. Munir, Liao, Hua-Xin, Cain, Derek W., Spicer, Leonard, VandeBerg, John L., Haynes, Barton F., Kelsoe, Garnett
Published 2013

Reconstructing a B-Cell Clonal Lineage. II. Mutation, Selection, and Affinity Maturation

by Kepler, Thomas B., Munshaw, Supriya, Wiehe, Kevin, Zhang, Ruijun, Yu, Jae-Sung, Woods, Christopher W., Denny, Thomas N., Tomaras, Georgia D., Alam, S. Munir, Moody, M. Anthony, Kelsoe, Garnett, Liao, Hua-Xin, Haynes, Barton F.
Published 2014

Microbial colonization influences early B-lineage development in the gut lamina propria

by Wesemann, Duane R., Portuguese, Andrew J., Meyers, Robin M., Gallagher, Michael P., Cluff-Jones, Kendra, Magee, Jennifer M., Panchakshari, Rohit A., Rodig, Scott J., Kepler, Thomas B., Alt, Frederick W.
Published 2013

Th17 cytokines differentiate obesity from obesity-associated type 2 diabetes and promote TNFα production

by Ip, Blanche, Cilfone, Nicholas, Belkina, Anna C., DeFuria, Jason, Jagannathan-Bogdan, Madhumita, Zhu, Min, Kuchibhatla, Ramya, McDonnell, Marie E., Xiao, Qiang, Kepler, Thomas B., Apovian, Caroline M., Lauffenburger, Douglas A., Nikolajczyk, Barbara S.
Published 2015

Key mutations stabilize antigen-binding conformation during affinity maturation of a broadly neutralizing influenza antibody lineage

by Xu, Huafeng, Schmidt, Aaron G, O'Donnell, Timothy, Therkelsen, Matthew D, Kepler, Thomas B, Moody, M Anthony, Haynes, Barton F, Liao, Hua-Xin, Harrison, Stephen C, Shaw, David E
Published 2015

Isolation of a Human Anti-HIV gp41 Membrane Proximal Region Neutralizing Antibody by Antigen-Specific Single B Cell Sorting

by Morris, Lynn, Chen, Xi, Alam, Munir, Tomaras, Georgia, Zhang, Ruijun, Marshall, Dawn J., Chen, Bing, Parks, Robert, Foulger, Andrew, Jaeger, Frederick, Donathan, Michele, Bilska, Mira, Gray, Elin S., Abdool Karim, Salim S., Kepler, Thomas B., Whitesides, John, Montefiori, David, Moody, M. Anthony, Liao, Hua-Xin, Haynes, Barton F.
Published 2011

Structural analysis of the unmutated ancestor of the HIV-1 envelope V2 region antibody CH58 isolated from an RV144 vaccine efficacy trial vaccinee☆

by Nicely, Nathan I., Wiehe, Kevin, Kepler, Thomas B., Jaeger, Frederick H., Dennison, S. Moses, Rerks-Ngarm, Supachai, Nitayaphan, Sorachai, Pitisuttithum, Punnee, Kaewkungwal, Jaranit, Robb, Merlin L., O'Connell, Robert J., Michael, Nelson L., Kim, Jerome H., Liao, Hua-Xin, Munir Alam, S., Hwang, Kwan-Ki, Bonsignori, Mattia, Haynes, Barton F.
Published 2015