Meeting Report on Experimental Approaches to Evolution and Ecology Using Yeast and Other Model Systems

by Gasch, Audrey P., Yvert, Gaël
Published 2015

Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering

by Gasch, Audrey P, Eisen, Michael B
Published 2002

Natural Variation in the Yeast Glucose-Signaling Network Reveals a New Role for the Mig3p Transcription Factor

by Lewis, Jeffrey A., Gasch, Audrey P.
Published 2012

Defining flexible vs. inherent promoter architectures: The importance of dynamics and environmental considerations

by Huebert, Dana J., Gasch, Audrey P.
Published 2012

Flexible promoter architecture requirements for coactivator recruitment

by Chiang, Derek Y, Nix, David A, Shultzaberger, Ryan K, Gasch, Audrey P, Eisen, Michael B
Published 2006

Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks

by Roy, Sushmita, Lagree, Stephen, Hou, Zhonggang, Thomson, James A., Stewart, Ron, Gasch, Audrey P.
Published 2013

Ecological and Genetic Barriers Differentiate Natural Populations of Saccharomyces cerevisiae

by Clowers, Katie J., Heilberger, Justin, Piotrowski, Jeff S., Will, Jessica L., Gasch, Audrey P.
Published 2015

Correction: Dosage compensation can buffer copy-number variation in wild yeast

by Hose, James, Yong, Chris Mun, Sardi, Maria, Wang, Zhishi, Newton, Michael A, Gasch, Audrey P
Published 2016

Dosage compensation can buffer copy-number variation in wild yeast

by Hose, James, Yong, Chris Mun, Sardi, Maria, Wang, Zhishi, Newton, Michael A, Gasch, Audrey P
Published 2015

Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution

by Gasch, Audrey P, Hose, James, Newton, Michael A, Sardi, Maria, Yong, Mun, Wang, Zhishi
Published 2016

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

by Lee, M Violet, Topper, Scott E, Hubler, Shane L, Hose, James, Wenger, Craig D, Coon, Joshua J, Gasch, Audrey P
Published 2011

Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi

by Gasch, Audrey P, Moses, Alan M, Chiang, Derek Y, Fraser, Hunter B, Berardini, Mark, Eisen, Michael B
Published 2004

Multiple Means to the Same End: The Genetic Basis of Acquired Stress Resistance in Yeast

by Berry, David B., Guan, Qiaoning, Hose, James, Haroon, Suraiya, Gebbia, Marinella, Heisler, Lawrence E., Nislow, Corey, Giaever, Guri, Gasch, Audrey P.
Published 2011

Comparative Genomics of Saccharomyces cerevisiae Natural Isolates for Bioenergy Production

by Wohlbach, Dana J., Rovinskiy, Nikolay, Lewis, Jeffrey A., Sardi, Maria, Schackwitz, Wendy S., Martin, Joel A., Deshpande, Shweta, Daum, Christopher G., Lipzen, Anna, Sato, Trey K., Gasch, Audrey P.
Published 2014

Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae

by Kennedy-Darling, Julia, Guillen-Ahlers, Hector, Shortreed, Michael R., Scalf, Mark, Frey, Brian L., Kendziorski, Christina, Olivier, Michael, Gasch, Audrey P., Smith, Lloyd M.
Published 2014

Pathway connectivity and signaling coordination in the yeast stress-activated signaling network

by Chasman, Deborah, Ho, Yi-Hsuan, Berry, David B, Nemec, Corey M, MacGilvray, Matthew E, Hose, James, Merrill, Anna E, Lee, M Violet, Will, Jessica L, Coon, Joshua J, Ansari, Aseem Z, Craven, Mark, Gasch, Audrey P
Published 2014

Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research

by McIlwain, Sean J., Peris, David, Sardi, Maria, Moskvin, Oleg V., Zhan, Fujie, Myers, Kevin S., Riley, Nicholas M., Buzzell, Alyssa, Parreiras, Lucas S., Ong, Irene M., Landick, Robert, Coon, Joshua J., Gasch, Audrey P., Sato, Trey K., Hittinger, Chris Todd
Published 2016

Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae

by Sato, Trey K., Tremaine, Mary, Parreiras, Lucas S., Hebert, Alexander S., Myers, Kevin S., Higbee, Alan J., Sardi, Maria, McIlwain, Sean J., Ong, Irene M., Breuer, Rebecca J., Narasimhan, Ragothaman Avanasi, McGee, Mick A., Dickinson, Quinn, La Reau, Alex, Xie, Dan, Tian, Mingyuan, Piotrowski, Jeff S., Reed, Jennifer L., Zhang, Yaoping, Coon, Joshua J., Hittinger, Chris Todd, Gasch, Audrey P., Landick, Robert
Published 2016

Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae

by Sato, Trey K., Tremaine, Mary, Parreiras, Lucas S., Hebert, Alexander S., Myers, Kevin S., Higbee, Alan J., Sardi, Maria, McIlwain, Sean J., Ong, Irene M., Breuer, Rebecca J., Avanasi Narasimhan, Ragothaman, McGee, Mick A., Dickinson, Quinn, La Reau, Alex, Xie, Dan, Tian, Mingyuan, Reed, Jennifer L., Zhang, Yaoping, Coon, Joshua J., Hittinger, Chris Todd, Gasch, Audrey P., Landick, Robert
Published 2016

Engineering and Two-Stage Evolution of a Lignocellulosic Hydrolysate-Tolerant Saccharomyces cerevisiae Strain for Anaerobic Fermentation of Xylose from AFEX Pretreated Corn Stover

by Parreiras, Lucas S., Breuer, Rebecca J., Avanasi Narasimhan, Ragothaman, Higbee, Alan J., La Reau, Alex, Tremaine, Mary, Qin, Li, Willis, Laura B., Bice, Benjamin D., Bonfert, Brandi L., Pinhancos, Rebeca C., Balloon, Allison J., Uppugundla, Nirmal, Liu, Tongjun, Li, Chenlin, Tanjore, Deepti, Ong, Irene M., Li, Haibo, Pohlmann, Edward L., Serate, Jose, Withers, Sydnor T., Simmons, Blake A., Hodge, David B., Westphall, Michael S., Coon, Joshua J., Dale, Bruce E., Balan, Venkatesh, Keating, David H., Zhang, Yaoping, Landick, Robert, Gasch, Audrey P., Sato, Trey K.
Published 2014